Hey guys, I have this problem too!
My 2010 RX450 doesn't get much use these days so the 12V battery drops to 12.5 volts after a 7 days or so. I've been charging it up via a CTEK charger (from the engine bay terminals) and noticed signs of water under the battery tray. Today, I removed the battery (it is relatively new as the previous one got damaged by being fully discharged due to lack of use). Under the battery tray was full of water which does not appear to be acidic (no smell and didn't burn my fingers)!
Anyway, I cleaned up all the water and rinsed it out with clean water, just in case. I was thinking that maybe the battery charger is damaging the battery (too much voltage/current) but it is designed for charging AGM batteries.
I discovered this thread and the penny has dropped! My car has been rear ended TWICE in the last few years by idiots driving too close and not paying attention. In each case, the bumper cover has been replaced with the parking sensors and associated trims. A different garage did each repair.
Now I am convinced that this may well be the source of the leak and I'll start checking the areas suggested.
I noticed that there are two removable rubber bungs in the floor pan of the battery recess. Can these be removed to allow any future water to drain or do they need to be kept in place. When removed, the road surface below is visible so they seem to be clear for drainage purposes?
Any advice appreciated.