Hey there
Great conversion.
I have a 1JZGTE VVTi with Getrag V160 fitted into my IS200. I see that you have found most of the small changes that you need to make - almost the same as mine. (For the tailshaft I use Landcruiser front shafts - everything in my car is Toyota sourced)
Things like the sump mod, greabox linkage shortening etc etc. - there is a never ending list of minor items that consume the time. Other items yet to be mentioned include air-conditioning connection, power steering connections as well as the best part - making 2 ECU's talk intelligently to each other. I have an Autronic SM2 fitted together with the IS200 ECU in the same case sharing signals. Took some working out.
Wait till you have to get the climate control to work - can help you with those sorts of issues.
Keep up the great work.
Cheers
Graham D